Publications

Acknowledgements

StemCore Laboratories undergoes annual evaluation based, in part, upon its ability to provide access to research enabling genomic technology platforms that are critical to scientific success, but difficult to manage within the context of an individual laboratory. One tangible demonstration of StemCore’s utility is the use of data generated within our laboratories in peer-reviewed publications. We therefore would appreciate the inclusion of a statement in manuscripts accepted for publication to acknowledge StemCore’s contribution to your research. We would also be very pleased to receive notification of such manuscripts when they are accepted for publication. Thank you for your ongoing support and use of StemCore’s facilities.

A suggested template for acknowledgement is:

“The authors would like to acknowledge the assistance of StemCore Laboratories Genomics Core Facility (OHRI, uOttawa), RRID:SCR_012601.”

Selected Publications

2021

  1. Carter LE., Cook DP., McCloskey CW., Grondin MA., Landry DA., Dang T., Collins O., Gamwell LF., Dempster HA., & Vanderhyden BC. Transcriptional Heterogeneity of Stemness Phenotypes in the Ovarian Epithelium. Communications Biology 2021;4:527.
  2. Robinson DCL., Ritso M., Nelson GM., Mokhtari Z., Nakka K., Bandukwala H., Goldman SR., Park PJ., Mounier R., Chazaud B., Brand M., Rudnicki MA., Adelman K., & Dilworth FJ. Negative Elongation Factor Regulates Muscle Progenitor Expansion for Efficient Myofiber Repair and Stem Cell Pool Repopulation. Developmental Cell 2021;56:1014-1029.e7.
  3. Sincennes MC., Brun CE., Lin AYT., Rosembert T., Datzkiw D., Saber J., Ming H., Kawabe Y., & Rudnicki MA. Acetylation of PAX7 Controls Muscle Stem Cell Self-Renewal and Differentiation Potential in Mice. Nature Communications 2021;12:3253.
  4. Viñas JL., Spence M., Porter CJ., Douvris A., Gutsol A., Zimpelmann JA., Campbell PA., & Burns KD. Micro-RNA-486-5p Protects against Kidney Ischemic Injury and Modifies the Apoptotic Transcriptome in Proximal Tubules. Kidney International, 2021;100:597–612.

2020

  1. McCloskey CW., Cook DP., Kelly BS., Azzi F., Allen CH., Forsyth A., Upham J., Rayner K J., Gray DA., Boyd RW., Murugkar S., Lo B., Trudel D., Senterman MK., & Vanderhyden BC. Metformin Abrogates Age-Associated Ovarian Fibrosis. Clinical Cancer Research 2020; 26:632–642.
  2. Viñas JL., Porter CJ., Douvris A., Spence M., Gutsol A., Zimpelmann JA., Tailor K., Campbell PA., & Burns KD. Sex Diversity in Proximal Tubule and Endothelial Gene Expression in Mice with Ischemic Acute Kidney Injury. Clinical Science, 2020;134:1887–1909.

2019

  1. Addicks GC., Brun CE., Sincennes MC., Saber J., Porter CJ., Francis Stewart A., Ernst P., & Rudnicki MA. MLL1 Is Required for PAX7 Expression and Satellite Cell Self-Renewal in Mice. Nature Communications 2019;10:4256.
  2. Shutinoski B., Hakimi M., Harmsen IE., Lunn M., Rocha J., Lengacher N., Zhou YY., Khan J., Nguyen A., Hake-Volling Q., El-Kodsi D., Li J., Alikashani A., Beauchamp C., Majithia J., Coombs K., Shimshek D., Marcogliese PC., Park DS., Rioux JD. , Philpott DJ., Woulfe JM., Hayley S., Sad S., Tomlinson JJ., Brown EG., Schlossmacher MG. Lrrk2 Alleles Modulate Inflammation during Microbial Infection of Mice in a Sex-Dependent Manner. Science Translational Medicine 2019;11:.
  3. Wang YX., Feige P., Brun CE., Hekmatnejad B., Dumont NA., Renaud JM., Faulkes S., Guindon DE., & Rudnicki MA. EGFR-Aurka Signaling Rescues Polarity and Regeneration Defects in Dystrophin-Deficient Muscle Stem Cells by Increasing Asymmetric Divisions. Cell Stem Cell 2019;24 419-432.e6.

2018

  1. Vuong NH, Cook DP, Forrest LA, et al. Single-cell RNA-sequencing reveals transcriptional dynamics of estrogen-induced dysplasia in the ovarian surface epithelium. PLOS Genetics 2018;14:e1007788.
  2. Soleimani VD, Nguyen D, Ramachandran P, et al. Cis-regulatory determinants of MyoD function. Nucleic acids research 2018;46:7221-35.
  3. Shafa M, Ionescu LI, Vadivel A, et al. Human induced pluripotent stem cell–derived lung progenitor and alveolar epithelial cells attenuate hyperoxia-induced lung injury. Cytotherapy 2018;20:108-25.
  4. Rothberg JLM, Maganti HB, Jrade H, et al. Mtf2-PRC2 control of canonical Wnt signaling is required for definitive erythropoiesis. Cell Discovery 2018;4:21.
  5. Maganti HB, Jrade H, Cafariello C, et al. Targeting the MTF2–MDM2 Axis Sensitizes Refractory Acute Myeloid Leukemia to Chemotherapy. Cancer Discovery 2018;8:1376.
  6. Liang L, Coudière-Morrison L, Tatari N, et al. CD271+ Cells Are Diagnostic and Prognostic and Exhibit Elevated MAPK Activity in SHH Medulloblastoma. Cancer Research 2018;78:4745.
  7. Hsu J, Hodgins JJ, Marathe M, et al. Contribution of NK cells to immunotherapy mediated by PD-1/PD-L1 blockade. The Journal of Clinical Investigation 2018;128:4654-68.
  8. Dorreen AP, Lo B, Little J, et al. Tu1678 - Micro-RNA in Early Colorectal Cancer: Discovery of a Novel Micro-RNA Profile. Gastroenterology 2018;154:S-992.
  9. Da Fonte DF, Xing L, Mikwar M, Trudeau VL. Secretoneurin-A inhibits aromatase B (cyp19a1b) expression in female goldfish (Carassius auratus) radial glial cells. General and Comparative Endocrinology 2018;257:106-12.
  10. Clark-Knowles KV, Dewar-Darch D, Jardine KE, et al. Modulating SIRT1 activity variously affects thymic lymphoma development in mice. Experimental Cell Research 2018;371:83-91.
  11. Bastin D, Aitken AS, Pelin A, et al. Enhanced susceptibility of cancer cells to oncolytic rhabdo-virotherapy by expression of Nodamura virus protein B2 as a suppressor of RNA interference. Journal for immunotherapy of cancer 2018;6:62-.

2017

  1. Vuong NH, Salah Salah O, Vanderhyden BC. 17ß-Estradiol sensitizes ovarian surface epithelium to transformation by suppressing Disabled-2 expression. Sci Rep 2017;7:16702.
  2. Vu M, Weiler B, Trudeau VL. Time- and dose-related effects of a gonadotropin-releasing hormone agonist and dopamine antagonist on reproduction in the Northern leopard frog (Lithobates pipiens). General and Comparative Endocrinology 2017;254:86-96.
  3. Taylor PK, Van Kessel ATM, Colavita A, Hancock REW, Mah T-F. A novel small RNA is important for biofilm formation and pathogenicity in Pseudomonas aeruginosa. PLOS ONE 2017;12:e0182582.
  4. Kumar R, Gont A, Perkins TJ, Hanson JEL, Lorimer IAJ. Induction of senescence in primary glioblastoma cells by serum and TGFß. Sci Rep 2017;7:2156.
  5. Hall CW, Zhang L, Mah T-F. PA3225 Is a Transcriptional Repressor of Antibiotic Resistance Mechanisms in Pseudomonas aeruginosa. Antimicrobial Agents and Chemotherapy 2017;61:e02114-16.
  6. Da Fonte DF, Martyniuk CJ, Xing L, et al. Secretoneurin A regulates neurogenic and inflammatory transcriptional networks in goldfish (Carassius auratus) radial glia. Sci Rep 2017;7:14930.
  7. Chen Z, Chang WY, Etheridge A, et al. Reprogramming progeria fibroblasts re-establishes a normal epigenetic landscape. Aging Cell 2017;16:870-87.
  8. Abdul-Ghani M, Suen C, Jiang B, et al. Cardiotrophin 1 stimulates beneficial myogenic and vascular remodeling of the heart. Cell Research 2017;27:1195-215.

2016

  1. Viñas JL, Burger D, Zimpelmann J, et al. Transfer of microRNA-486-5p from human endothelial colony forming cell–derived exosomes reduces ischemic kidney injury. Kidney International 2016;90:1238-50.

2015

  1. Yamak A, Georges RO, Sheikh-Hassani M, Morin M, Komati H, Nemer M. Novel Exons in the Tbx5 Gene Locus Generate Protein Isoforms with Distinct Expression Domains and Function. The Journal of Biological Chemistry 2015;290:6844-56.
  2. Smid JK, Faulkes S, Rudnicki MA. Periostin Induces Pancreatic Regeneration. Endocrinology 2015;156:824-36.
  3. Price FD, von Maltzahn J, Bentzinger CF, et al. Corrigendum: Inhibition of JAK-STAT signaling stimulates adult satellite cell function. Nature medicine 2015;21:414-420.
  4. Jones AE, Price FD, Le Grand F, et al. Wnt/ß-catenin controls follistatin signalling to regulate satellite cell myogenic potential. Skeletal Muscle 2015;5:14.
  5. Dumont NA, Wang YX, von Maltzahn J, et al. Dystrophin expression in muscle stem cells regulates their polarity and asymmetric division. Nature Medicine 2015;21:1455.
  6. Baldwin RM, Haghandish N, Daneshmand M, et al. Protein arginine methyltransferase 7 promotes breast cancer cell invasion through the induction of MMP9 expression. Oncotarget 2015;6:3013-32.

2014

  1. Sikora D, Rocheleau L, Brown EG, Pelchat M. Deep sequencing reveals the eight facets of the influenza A/HongKong/1/1968 (H3N2) virus cap-snatching process. Sci Rep 2014:6181.
  2. Price FD, von Maltzahn J, Bentzinger CF, et al. Inhibition of JAK/STAT signaling stimulates adult satellite cell function. Nature medicine 2014;20:1174-81.
  3. Palii Carmen G, Vulesevic B, Fraineau S, et al. Trichostatin A Enhances Vascular Repair by Injected Human Endothelial Progenitors through Increasing the Expression of TAL1-Dependent Genes. Cell Stem Cell 2014;14:644-57.
  4. Muharemagic D, Zamay A, Ghobadloo SM, et al. Aptamer-facilitated Protection of Oncolytic Virus from Neutralizing Antibodies. Molecular Therapy Nucleic Acids 2014;3:e167.
  5. Karapetis CS, Jonker D, Daneshmand M, et al. PIK3CA, BRAF, and PTEN Status and Benefit from Cetuximab in the Treatment of Advanced Colorectal Cancer—Results from NCIC CTG/AGITG CO.17. Clinical Cancer Research 2014;20:744.
  6. Gallagher JM, Yamak A, Kirilenko P, et al. Carboxy terminus of GATA4 transcription factor is required for its cardiogenic activity and interaction with CDK4. Mechanisms of Development 2014;134:31-41.
  7. Coulombe J, Gamage P, Gray MT, et al. Loss of UCHL1 promotes age-related degenerative changes in the enteric nervous system. Frontiers in Aging Neuroscience 2014;6:129.
  8. Aries A, Whitcomb J, Shao W, Komati H, Saleh M, Nemer M. Caspase-1 cleavage of transcription factor GATA4 and regulation of cardiac cell fate. Cell Death &Amp; Disease 2014;5:e1566.

2013

  1. Yin H., Pasut A., Soleimani V.D., et al. MicroRNA-133 Controls Brown Adipose Determination in Skeletal Muscle Satellite Cells by Targeting Prdm16. Cell Metabolism 2013;5:210-24.
  2. Yin H, Price F, Rudnicki MA. Satellite cells and the muscle stem cell niche. Physiol Review 2013;93:23-67.
  3. Ward TL, Hosid S, Ioshikhes I, Altosaar I. Human milk metagenome: a functional capacity analysis. BMC Microbiology 2013;13:116-.
  4. Price FD, Yin H, Jones A, van Ijcken W, Grosveld F, MA. R. Canonical Wnt signaling induces a primitive endoderm metastable state in mouse embryonic stem cells. Stem Cells 2013;31:752-64.
  5. Patrick C, Wang G-S, Lefebvre DE, et al. Promotion of Autoimmune Diabetes by Cereal Diet in the Presence or Absence of Microbes Associated With Gut Immune Activation, Regulatory Imbalance, and Altered Cathelicidin Antimicrobial Peptide. Diabetes 2013;62:2036-47.
  6. Melanson BD, Cabrita MA, Bose R, et al. A novel cis-acting element from the 3‘ UTR of DNA damage-binding protein 2 mRNA links transcriptional and post-transcriptional regulation of gene expression. Nucleic Acids Research 2013;41:5692-703.
  7. Greco-Stewart VS, Ali H, Kumaran D, et al. Biofilm formation by Staphylococcus capitis strains isolated from contaminated platelet concentrates. Journal of Medical Microbiology 2013;62:1051-9.
  8. Dankar SK, Miranda E, Forbes NE, et al. Influenza A/Hong Kong/156/1997(H5N1) virus NS1 gene mutations F103L and M106I both increase IFN antagonism, virulence and cytoplasmic localization but differ in binding to RIG-I and CPSF30. Virology Journal 2013;10:243.
  9. Dalby SJ, Bonen L. Impact of low temperature on splicing of atypical group II introns in wheat mitochondria. Mitochondrion 2013;13:647-55.
  10. Campbell P, Rudnicki, MA. . Oct4 interaction with Hmgb2 regulates Akt signaling and Pluripotency. Stem Cells 2013;31:1107-20.
  11. Andrade-Navarro MA, Kanji F, Palii CG, Brand M, Atkins H, Perez-Iratxeta C. A method for cell type marker discovery by high-throughput gene expression analysis of mixed cell populations. BMC Biotechnology 2013;13:80.

2012

  1. Wan S, Johnson AM, Altosaar I. Expression of nitrous oxide reductase from Pseudomonas stutzeri in transgenic tobacco roots using the root-specific rolD promoter from Agrobacterium rhizogenes. Ecology and Evolution 2012;2:286-97.
  2. Soleimani VD, Yin H, Jahani-Asl A, Ming H, Kockx CE, Ijcken WF. Snail regulates MyoD binding-site occupancy to direct enhancer switching and differentiation-specific transcription in myogenesis. Mol Cell 2012;47.
  3. Soleimani V, Punch V, Kawabe Y, et al. Transcriptional dominance of Pax7 in adult myogenesis is due to high-affinity recognition of homeodomain motifs. Developmental Cell 2012;22:1208-20.
  4. Pasut A, Oleynik P, MA. R. Isolation of muscle stem cells by fluorescence activated cell sorting cytometry. Methods Mol Biol 2012;798:53-64.
  5. Liu QC, Zha XH, Faralli H, Yin H, Louis-Jeune C, Perdiguero E. Comparative expression profiling identifies differential roles for Myogenin and p38alpha MAPK signaling in myogenesis. J Mol Cell Biol 2012;4.
  6. Howe GA, Addison CL. ß1 integrin: an emerging player in the modulation of tumorigenesis and response to therapy. Cell Adhesion and Migration 2012;6:71-7.
  7. Ho Sui SJ, Begley K, Reilly D, et al. The Stem Cell Discovery Engine: an integrated repository and analysis system for cancer stem cell comparisons. Nucleic Acids Res 2012;40:D984-91.
  8. Gamwell LF, Collins O, Vanderhyden BC. The Mouse Ovarian Surface Epithelium Contains a Population of LY6A (SCA-1) Expressing Progenitor Cells That Are Regulated by Ovulation-Associated Factors1. Biology of Reproduction 2012;87:80, 1-10-80, 1-10.
  9. Duarte-Guterman P, Ryan MJ, Hogan NS, Trudeau VL. Developmental profiles and thyroid hormone regulation of brain transcripts in frogs: a species comparison with emphasis on Physalaemus pustulosus. Brain Behav Evol 2012;79:98-112.
  10. Daneshmand M, Hanson JEL, Nabavi M, et al. Detection of PIK3CA Mutations in Breast Cancer Bone Metastases. ISRN Oncology 2012;2012:492578.

2011

  1. Yan D, Stocco R, Sawyer N, Nesheim ME, Abramovitz M, Funk CD. Differential Signaling of Cysteinyl Leukotrienes and a Novel Cysteinyl Leukotriene Receptor 2 (CysLT2) Agonist, N-Methyl-Leukotriene C4, in Calcium Reporter and ß Arrestin Assays. Molecular Pharmacology 2011;79:270.
  2. Swist E, Chen Q, Qiao C, Caldwell D, Gruber H, Scoggan KA. Excess dietary iodine differentially affects thyroid gene expression in diabetes, thyroiditis-prone versus -resistant BioBreeding (BB) rats. Mol Nutr Food Res 2011;55:1875-86.
  3. Palii CG, Perez-Iratxeta C, Yao Z, et al. Differential genomic targeting of the transcription factor TAL1 in alternate haematopoietic lineages. EMBO J 2011;30:494-509.
  4. Melanson BD, Bose R, Hamill JD, Marcellus KA, Pan EF, McKay BC. The role of mRNA decay in p53-induced gene expression. RNA 2011;17:2222-34.
  5. Dankar SK, Wang S, Ping J, et al. Influenza A virus NS1 gene mutations F103L and M106I increase replication and virulence. Virol J 2011;8:13.
  6. Chen Q, Swist E, Beckstead J, et al. Dietary fructooligosaccharides and wheat bran elicit specific and dose-dependent gene expression profiles in the proximal colon epithelia of healthy Fischer 344 rats. J Nutr 2011;141:790-7.

2010

  1. Li L WS, Jezierski A, Moalim-Nour L, Mohib K, Parks RJ, Retta SF, Wang L. A unique interplay between Rap1 and E-cadherin in the endocytic pathway regulates self-renewal of human embryonic stem cells. Stem Cells 2010 28:247-57.
  2. Xuefang Xie MDS, Ebony R. Coats, Mir Munir Ahmed Rahim, Alyssa Lundgren, Wenhao Xu, Andrew P. Makrigiannis, and Michael G. Browna,. MHC class I Dk expression in hematopoietic and nonhematopoietic cells confers natural killer cell resistance to murine cytomegalovirus. Proc Natl Acad Sci U S A 2010;107:8754–87 59.
  3. Tomlinson JJ BA, Wu D, Abdou Salem H, Carrigan A, Gagnon A, Mears AJ, Sorisky A, Atlas E, Haché RJ. Insulin sensitization of human preadipocytes through glucocorticoid hormone induction of forkhead transcription factors. Mol Endocrinol 2010;24:104-13.
  4. Scimè A DJ, Trensz F, Palidwor GA, Caron AZ, Andrade-Navarro MA, Grenier G. Transcriptional profiling of skeletal muscle reveals factors that are necessary to maintain satellite cell integrity during ageing. Mech Ageing Dev 2010;131:9-20.
  5. Schnerch A CC, Bhatia M. Distinguishing between mouse and human pluripotent stem cell regulation: the best laid plans of mice and men. Stem Cells 2010.
  6. Sasawatari S, Yoshizaki M, Taya C, et al. The Ly49Q receptor plays a crucial role in neutrophil polarization and migration by regulating raft trafficking. Immunity 2010;32:200-13.
  7. Ping J DS, Forbes NE, Keleta L, Zhou Y, Tyler S, Brown EG. PB2 and hemagglutinin mutations are major determinants of host range and virulence in mouse-adapted influenza A virus. J Virol 2010;84:10606-18.
  8. Patel R BS, Tai LH, Troke AD, Makrigiannis AP. Effect of Ly49 haplotype variance on NK cell function and education. J Immunol 2010;185:4783-92.
  9. Pardo M, Lang B, Yu L, et al. An expanded Oct4 interaction network: implications for stem cell biology, development, and disease. Cell Stem Cell 2010;6:382-95.
  10. Miura P CA, Bélanger G, De Repentigny Y, Lee J, Kothary R, Holcik M, Jasmin BJ. The utrophin A 5'-UTR drives cap-independent translation exclusively in skeletal muscles of transgenic mice and interacts with eEF1A2. Hum Mol Genet 2010;19:1211-20.
  11. Lim SJ, Tan TW, Tong JC. Computational Epigenetics: the new scientific paradigm. Bioinformation 2010;4:331-7.
  12. Li L, Wang BH, Wang S, et al. Individual cell movement, asymmetric colony expansion, rho-associated kinase, and E-cadherin impact the clonogenicity of human embryonic stem cells. Biophys J 2010;98:2442-51.
  13. Lewis JM, Hori TS, Rise ML, Walsh PJ, Currie S. Transcriptome responses to heat stress in the nucleated red blood cells of the rainbow trout (Oncorhynchus mykiss). Physiological Genomics 2010;42:361-73.
  14. Hayashi M, Nakashima T, Kodama T, Makrigiannis AP, Toyama-Sorimachi N, Takayanagi H. Ly49Q, an ITIM-bearing NK receptor, positively regulates osteoclast differentiation. Biochem Biophys Res Commun 2010;393:432-8.
  15. Benveniste P, Frelin C, Janmohamed S, et al. Intermediate-term hematopoietic stem cells with extended but time-limited reconstitution potential. Cell Stem Cell 2010;6:48-58.

2009

  1. Werbowetski-Ogilvie TE, Bosse M, Stewart M, et al. Characterization of human embryonic stem cells with features of neoplastic progression. Nat Biotechnol 2009;27:91-7.
  2. Savage J, Conley AJ, Blais A, Skerjanc IS. SOX15 and SOX7 differentially regulate the myogenic program in P19 cells. Stem Cells 2009;27:1231-43.
  3. Sandie R, Palidwor GA, Huska MR, et al. Recent developments in StemBase: a tool to study gene expression in human and murine stem cells. BMC Res Notes 2009;2:39.
  4. Ross PJ, Kennedy MA, Parks RJ. Host Cell Detection of Noncoding Stuffer DNA Contained in Helper-Dependent Adenovirus Vectors Leads to Epigenetic Repression of Transgene Expression. Journal of Virology 2009;83:8409-17.
  5. Pratt MA TE, Robertson SJ, Jansson D, Hurst K, Perez-Iratxeta C, Lau R, Niu MY. The canonical NF-kappaB pathway is required for formation of luminal mammary neoplasias and is activated in the mammary progenitor population. Oncogene 2009;28:2710-22.
  6. Natale DR, Hemberger M, Hughes M, Cross JC. Activin promotes differentiation of cultured mouse trophoblast stem cells towards a labyrinth cell fate. Dev Biol 2009;335:120-31.
  7. Muro EM MJ, Rudnicki MA, Andrade-Navarro MA. Use of SNP-arrays for ChIP assays: computational aspects. Methods Mol Biol 2009;567:145-54.
  8. Le Grand F, Jones AE, Seale V, Scime A, Rudnicki MA. Wnt7a activates the planar cell polarity pathway to drive the symmetric expansion of satellite stem cells. Cell Stem Cell 2009;4:535-47.
  9. Hu G, Kim J, Xu Q, Leng Y, Orkin SH, Elledge SJ. A genome-wide RNAi screen identifies a new transcriptional module required for self-renewal. Genes & Development 2009;23:837-48.
  10. Haddon DJ, Hughes MR, Antignano F, Westaway D, Cashman NR, McNagny KM. Prion protein expression and release by mast cells after activation. J Infect Dis 2009;200:827-31.
  11. Doyle PJ, Saeed H, Hermans A, et al. Intracellular Expression of a Single Domain Antibody Reduces Cytotoxicity of 15-Acetyldeoxynivalenol in Yeast. Journal of Biological Chemistry 2009;284:35029-39.

2008

  1. Wang S, Liu Q, Pu J, et al. Simplified recombinational approach for influenza A virus reverse genetics. J Virol Methods 2008;151:74-8.
  2. Tam W-L, Lim CY, Han J, et al. T-Cell Factor 3 Regulates Embryonic Stem Cell Pluripotency and Self-Renewal by the Transcriptional Control of Multiple Lineage Pathways. Stem cells (Dayton, Ohio) 2008;26:2019-31.
  3. Raouf A, Zhao Y, To K, et al. Transcriptome analysis of the normal human mammary cell commitment and differentiation process. Cell Stem Cell 2008;3:109-18.
  4. Pineault N, Boucher JF, Cayer MP, et al. Characterization of the effects and potential mechanisms leading to increased megakaryocytic differentiation under mild hyperthermia. Stem Cells Dev 2008;17:483-93.
  5. McKinnell IW, Ishibashi J, Le Grand F, et al. Pax7 activates myogenic genes by recruitment of a histone methyltransferase complex. Nat Cell Biol 2008;10:77-84.
  6. Lee RE, Puente LG, Kaern M, Megeney LA. A non-death role of the yeast metacaspase: Yca1p alters cell cycle dynamics. PLoS One 2008;3:e2956.
  7. Goulet I, Boisvenue S, Mokas S, Mazroui R, Cote J. TDRD3, a novel Tudor domain-containing protein, localizes to cytoplasmic stress granules. Hum Mol Genet 2008;17:3055-74.
  8. Calixte S BL. Developmentally-specific transcripts from the ccmFN-rps1 locus in wheat mitochondria. Mol Genet Genomics 2008;280:419-26.
  9. Baldwin RM, Parolin, Lorimer AJ. Regulation of glioblastoma cell invasion by PKC? and RhoB. Oncogene (2008) 27, 3587–3595 2008;27:3587-95.
  10. Bakkar N, Wang J, Ladner KJ, et al. IKK/NF-kappaB regulates skeletal myogenesis via a signaling switch to inhibit differentiation and promote mitochondrial biogenesis. J Cell Biol 2008;180:787-802.
  11. Archer SL G-MM, Maitland ML, Rich S, Garcia JG, Weir EK. Mitochondrial metabolism, redox signaling, and fusion: a mitochondria-ROS-HIF-1alpha-Kv1.5 O2-sensing pathway at the intersection of pulmonary hypertension and cancer. Am J Physiol Heart Circ Physiol 2008;294:H570-8.

2007

  1. zur Nieden NI PF, Davis LA, Everitt RE, Rancourt DE. Gene profiling on mixed embryonic stem cell populations reveals a biphasic role for beta-catenin in osteogenic differentiation. Mol Endocrinol 2007;21:674-85.
  2. Smith JM, Stubbert LJ, Hamill JD, McKay BC. The Contribution of Transactivation Subdomains 1 and 2 to p53-Induced Gene Expression Is Heterogeneous But Not Subdomain-Specific. Neoplasia 2007;9:1057-65.
  3. Power AT, Wang J, Falls TJ, et al. Carrier cell-based delivery of an oncolytic virus circumvents antiviral immunity. Mol Ther 2007;15:123-30.
  4. Porter CJ, Palidwor GA, Sandie R, et al. StemBase: a resource for the analysis of stem cell gene expression data. Methods Mol Biol 2007;407:137-48.
  5. McCann JA, Muro EM, Palmer C, et al. ChIP on SNP-chip for genome-wide analysis of human histone H4 hyperacetylation. BMC Genomics 2007;8:322.
  6. Kuang S, Kuroda K, Le Grand F, Rudnicki MA. Asymmetric self-renewal and commitment of satellite stem cells in muscle. Cell 2007;129:999-1010.
  7. Kuang S, Kuroda K, Grand F, Rudnicki MA. Asymmetric self-renewal and commitment of satellite stem cells in muscle. Cell 2007;129.
  8. Holterman CE, Le Grand F, Kuang S, Seale P, Rudnicki MA. Megf10 regulates the progression of the satellite cell myogenic program. J Cell Biol 2007;179:911-22.
  9. Holterman CE, Grand F, Kuang S, Seale P, Rudnicki MA. Megf10 regulates the progression of the satellite cell myogenic program. J Cell Biol 2007;179.
  10. Hailesellasse Sene K, Porter CJ, Palidwor G, et al. Gene function in early mouse embryonic stem cell differentiation. BMC Genomics 2007;8:85.
  11. Grenier G, Scime A, Le Grand F, et al. Resident endothelial precursors in muscle, adipose, and dermis contribute to postnatal vasculogenesis. Stem Cells 2007;25:3101-10.
  12. Goulet I, Gauvin G, Boisvenue S, Cote J. Alternative splicing yields protein arginine methyltransferase 1 isoforms with distinct activity, substrate specificity, and subcellular localization. J Biol Chem 2007;282:33009-21.
  13. Campbell PA, Perez-Iratxeta C, Andrade-Navarro MA, Rudnicki MA. Oct4 targets regulatory nodes to modulate stem cell function. PLoS One 2007;2:e553.
  14. Brack AS, Conboy MJ, Roy S, Lee M, Kuo CJ, Keller C. Increased Wnt signaling during aging alters muscle stem cell fate and increases fibrosis. Science 2007;317.

2006

  1. Puente LG, Voisin S, Lee RE, Megeney LA. Reconstructing the regulatory kinase pathways of myogenesis from phosphopeptide data. Mol Cell Proteomics 2006;5:2244-51.
  2. Puente LG, Borris DJ, Carrière J-F, Kelly JF, Megeney LA. Identification of Candidate Regulators of Embryonic Stem Cell Differentiation by Comparative Phosphoprotein Affinity Profiling. Molecular & Cellular Proteomics 2006;5:57-67.
  3. Palidwor G, Reynaud EG, Andrade-Navarro MA. Taxonomic colouring of phylogenetic trees of protein sequences. BMC Bioinformatics 2006;7.
  4. Muro EM, Perez-Iratxeta C, Andrade-Navarro MA. Amplification of the Gene Ontology annotation of Affymetrix probe sets. BMC Bioinformatics 2006;7:159.
  5. Bonnet S, Michelakis ED, Porter CJ, et al. An abnormal mitochondrial-hypoxia inducible factor-1alpha-Kv channel pathway disrupts oxygen sensing and triggers pulmonary arterial hypertension in fawn hooded rats: similarities to human pulmonary arterial hypertension. Circulation 2006;113:2630-41.
  6. Baldwin RM, Garratt-Lalonde M, Parolin DA, Krzyzanowski PM, Andrade MA, Lorimer IA. Protection of glioblastoma cells from cisplatin cytotoxicity via protein kinase Ciota-mediated attenuation of p38 MAP kinase signaling. Oncogene 2006; 25:2909-19.

2005

  1. Xia X, Palidwor G. Genomic adaptation to acidic environment: evidence from Helicobacter pylori. Am Nat 2005;166:776-84.
  2. Suomela BP, MA. A. Ranking the whole MEDLINE database according to a large training set using text indexing. BMC Bioinformatics 2005;6.
  3. Scimè A, Grenier G, Huh MS, et al. Rb and p107 regulate preadipocyte differentiation into white versus brown fat through repression of PGC-1alpha. Cell Metab 2005; 2:283-95.
  4. Savchenko A, Krogan N, Cort JR, et al. The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA metabolism. J Biol Chem 2005;280:19213-20.
  5. Reynaud EG, Andrade MA, Bonneau F, et al. Human Lsg1 defines a family of essential GTPases that correlates with the evolution of compartmentalization. BMC Biology 2005;3.
  6. Perez-Iratxeta C, Wjst M, Bork P, Andrade MA. G2D: a tool for mining genes associated with disease. BMC Genet 2005;6:45.
  7. Perez-Iratxeta C, Palidwor G, Porter CJ, et al. Study of stem cell function using microarray experiments. FEBS Letters 2005;579:1795-801.
  8. Perez-Iratxeta C, Andrade MA. Inconsistencies over time in 5% of NetAffx probe-to-gene annotations. BMC Bioinformatics 2005;6:183.
  9. Kendal WS, Suomela BP. Large-scale genomic correlations in Arabidopsis thaliana relate to chromosomal structure. BMC Genomics 2005;6:82.
  10. Fernando P, Deng W, Pekalska B, et al. Active kinase proteome screening reveals novel signal complexity in cardiomyopathy. Mol Cell Proteomics 2005;4:673-82.
  11. Berkes CA, Tapscott SJ. MyoD and the transcriptional control of myogenesis. Semin Cell Dev Biol 2005;16.

2004

  1. Yauk CL, Berndt ML, Williams A, GR D. Comprehensive comparison of six microarray technologies. Nucleic Acids Research 2004;32:e124.
  2. Seale P, Holtreman C, MA R. Muscle satellite cell-specific genes identified by genetic profiling of MyoD-deficient myogenic cell. Dev Biol 2004;275.
  3. Puente LG, Carrière JF, Kelly JF, LA. M. Comparative analysis of phosphoprotein-enriched myocyte proteomes reveals widespread alterations during differentiation. FEBS Lett 2004;574:138-44.

2003

  1. Polesskaya A, Seale P, Rudnicki MA. Wnt signaling induces the myogenic specification of resident CD45+ adult stem cells during muscle regeneration. Cell 2003;113:841-52.

2002

  1. Hierlihy AM, Seale P, Lobe CG, Rudnicki MA, Megeney LA. The post-natal heart contains a myocardial stem cell population. FEBS Lett 2002;530:239-43.